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CellDesigner
CellDesignerTM is a structured diagram editor for drawing gene-regulatory and biochemical networks.
Networks are drawn based on the process diagram, with the graphical notation system proposed by Kitano, and are stored using the Systems Biology Markup Language (SBML), a standard for representing models of biochemical and gene-regulatory networks. They are able to link with simulation and other analysis packages through Systems Biology Workbench (SBW)

Biochemical, Gene Regulatory Networks Modeling with GUI

CellDesigner 2.0 Screen Shot
Screenshot of CellDesigner 2.0 describing a part of Yeast Cell Cycle process.


Visual Representation of Biochemical Semantics

payway diagram comparison

Graphical Notation:
CellDesigner supports graphical notation and listing of the symbols based on proposal by Kitano.(http://www.sbw-sbml.org/workshops/sizth/sbmlsbwstockholm.htm).

Linkage to SBW-powered Simulator modules





SBML compliant


Easy data exchange with other SBML compliant application.


>>Now TRY CellDesigner 2.2!
  • Download from here. Abailable free of charge. All you need is to register your e-mail.
  • Check celldesigner.org for detail information.
    >>You can also TRY CellDesigner 3.0 alpha! for feel a sense of new notation scheme.

    Click to display the leaflet >>
  •   Copyright © 2003 The Systems Biology Institute, All Rights Reserved.