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Announcement / 2019 Calendar

online cell modeling seminar


The Center for Reproducible Biomedical Modeling would like to invite you to participate in a monthly online cell modeling seminar beginning Tuesday November 6th.

Predictive models of cells are needed to understand biology, rationally design microorganisms, and precisely treat disease. Numerous challenges must be overcome to develop predictive models of entire cells. This seminar aims to stimulate discussion about how to overcome these challenges and foster an interdisciplinary cell modeling community.

  • November 6, 2018: Sheriff Rahuman
    Project Leader, European Bioinformatics Institute
    Leveraging public data repositories for cell modeling
  • December 4, 2018: Bill Hlavacek
    Scientist, Los Alamos National Laboratory
    Formalizing and leveraging qualitative observations of system behavior in model development
  • January 8, 2019: Stephen Larson
    Co-founder, OpenWorm Foundation and CEO, MetaCell
    OpenWorm: Building a whole animal simulation
  • February 5, 2019: Barbara Bakker
    Professor, University Medical Center Groningen
    Computational models and network-based drug design for metabolic disease
  • March 5, 2019: Andrew Hessel
    CEO, Humane Genomics
    GP-write and the future of engineering living organisms: a personal perspective
  • April 2, 2019: Jacky Snoep  
    Professor, University of Stellenbosch
    Data and model management using the FAIRDOMHub: from experiment to model simulation and publication
  • Day/Time:  First Tuesday of each month, starting November 6th @ 3pm EDT
  • Replay with second discussion: First Thursday of each month @ 9 am IST
  • Location: Online Zoom webinar [link]
  • Format: 25-min presentation & 35-min group discussion
  • Archive: Past seminars will be available at YouTube
  • More infohttps://reproduciblebiomodels.org/seminar

Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK

March 18th-20th, 2019

Heidelberg, Germany


During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer. The third day SABIO-RK is used as a resource for kinetic data and FAIRDOMHub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists. The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks.


More details including the registration form can be found on the website: https://www.denbi.de/training/467-tools-for-systems-biology-modeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek


March 25-29, 2019

Pasadena, California, USA, on the campus of the California Institute of Technology.   


HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure for computational modeling in biology. There are generally not as many general discussions or oral presentations during HARMONY as in other events; instead, the time is devoted to allowing hands-on hacking and interaction between people focused on practical development of software and standards. 

EBMO Whole-Cell Modeling Summer School

April 7-13, 2019

Center for Genomic Regulation, Barcelona, Spain

The EMBO Practical Course on Whole-Cell Modeling will teach students the fundamentals of whole-cell modeling and provide them opportunities to network with other promising whole-cell modelers. 

Application deadline: January 13, 2019

EMBO Workshop 2019 Protein quality control: From mechanisms to disease

28 April – 3 May 2019

EMBO Workshop 2019
Protein quality control: From mechanisms to disease

Costa de la Calma (Mallorca), Spain
Organzizer: Prof. Dr. Bernd Bukau

Scientific Program
Opening Session:  Balancing Proteostasis in Health and Disease
Session 1: Mechanisms of Chaperone Networks
Session 2: Ribosome Quality Control and Surveillance of Newly 
Synthesized Proteins
Session 3: Protein Homeostasis in Organelles
Session 4: Proteolysis in Protein Quality Control
Session 5: Phase Separation and Aggregation of Proteins
Session 6: Challenges for Proteostasis in Aging and Disease
Session 7: Conformation Diseases and Therapeutic Approaches

SBHD 2019 - Systems Biology of Human Disease

May 27 - 29, 2019

The "International Conference on Systems Biology of Human Disease 2019" (SBHD 2019) 

Kaiserin Friedrich-Haus in Berlin, Germany.

See details: http://www.sbhdberlin.org

Data-driven systems medicine

Jun 11-12th, 2019

 DELL EMC and Partners are delighted to be hosting Data-driven systems medicine workshop at the Cardiff University Brain Research Imaging Centre (CUBRIC) on June 11th-12th, 2019, Maindy Road, CF24 4HQ Cardiff. The event is free but early registration is necessary:https://www.eventbrite.co.uk/e/data-driven-systems-medicine-tickets-58021562054?utm_term=eventurl_text

The aim of this day and a half long workshop is to gather a multi-disciplinary group of experts from both Academia and IT/Parmaceutical Industry who recognize the applicability of machine learning and computational methods in systems medicine, as a first step on the path to personalised medicine. They will discuss the ways that artificial intelligence and systems modelling can be applied to issues relating to medicine and healthcare using best practice to detail the synergies and interfaces between the different scientific communities and IT industry. 

The event will run from 12pm-5pm June 11th to 8.45am-4pm June 12th and will host 14 invited speakers. The workshop is intended for senior PhD students, postdocs, researchers, academics and representatives of Industry with interest/background in the area of data/health science and systems medicine. Up to 15 poster boards are also available. Please contact szomolayb@cardiff.ac.uk with any inquiries.

6th International Synthetic & Systems Biology Summer School - SSBSS 2019

July 22-26, 2019

Scuola Normale Superiore di Pisa, Tuscany, Italy July 22-26

The Synthetic and Systems Biology Summer School (SSBSS) is a full-immersion five-day residential summer school at the  Scuola Normale Superiore di Pisa, on cutting-edge advances in systems and synthetic biology with lectures delivered by world-renowned experts. The school provides a stimulating environment for students (from Master students to PhD students), Post-Docs, early career researches, academics and industry leaders. Participants will also have the chance to present their results (with Oral Talks and Posters), and to interact with their peers, in a friendly and constructive environment.


Metabolic Pathway Analysis 2019

12th - 16th of August, 2019

Riga, Latvia
University of Latvia Academic Centre for Life Sciences

Deadlines: Abstracts: 12th of April, 
Early registration: 15th of June

Course: Computational Systems Biology of Cancer: Single Cell Analysis

September 23-28, 2019

Place: Institut Curie, Paris, France




Registration: no fees (the free-of-charge registration is compulsory)

Application deadline20 June, 2019

Selection results: July 1, 2019


16th International Conference on Molecular Systems Biology

October 28-30, 2019

De La Salle University, Manila, Philippines

ICSB 2019 - 20th International Conference on Systems Biology

Nov 1 - 5, 2019

Okinawa Institute of Science and Technology Graduate School, Okinawa, Japan


Important Dates:
  • Call for Tutorials & Workshops: February, 2019
  • Call for Papers :                         May, 2019  June 28, 2019
Submission Deadline: June 28 , 2019
Notification of Acceptance: August 20, 2019