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SBML models for KEGG

All SBML files in this directory were converted from KEGG (Kyoto Encyclopedia on Genes and Genomes) by using our conversion script kegg2sbml with the permission of Professor Minoru Kanehisa (Kyoto University).
The conversion was performed by Akiya Jouraku, Akira Funahashi and Hiroaki Kitano, as part of the JST ERATO-SORST Kitano Symbiotic Systems Project. Publication of papers and other documents based on this database must include proper acknowledgment of this fact.

SBML models for KEGG Metabolic Pathways(Released 2004.6.16)

Source Databases:

* KEGG Metabolic Pathways Release 30
* KGML v0.4 files for KEGG Metabolic Pathways
* LIGAND Release 29

Downloadable tarballs:
* SBML files without CellDesigner's tag :[Level-1 Ver-2|Level-2 Ver-1]
* SBML files with CellDesigner's tag :[Level-1 Ver-2|Level-2 Ver-1]

Species-specific metabolic pathways:
Aquifex aeolicus
Archaeoglobus fulgidus
Anabaena sp.
Aeropyrum pernix
Agrobacterium tumefaciens C58 Cereon
Arabidopsis thaliana
Agrobacterium tumefaciens C58 UWash
Buchnera aphidicola Bp
Bacillus anthracis
Buchnera aphidicola Sg
Bdellovibrio bacteriovorus
Bordetella bronchiseptica
Borrelia burgdorferi
Bacillus cereus ATCC 10987
Bacillus cereus
Blochmannia floridanus
Bacillus halodurans
Bradyrhizobium japonicum
Bifidobacterium longum
Brucella melitensis
Brucella suis
Bordetella parapertussis
Bordetella pertussis
Bacillus subtilis
Bacteroides thetaiotaomicron
Buchnera sp.
Clostridium acetobutylicum
Coxiella burnetii
Chlamydophila caviae
Caulobacter crescentus
Corynebacterium diphtheriae
Corynebacterium efficiens
Caenorhabditis elegans
Corynebacterium glutamicum
Campylobacter jejuni
Chlamydia muridarum
Chlamydophila pneumoniae AR39
Clostridium perfringens
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae TW183
Clostridium tetani E88
Chlorobium tepidum
Chlamydia trachomatis
Chromobacterium violaceum
Drosophila melanogaster
Deinococcus radiodurans
Escherichia coli CFT073
Escherichia coli O157 EDL933
Escherichia coli K-12 W3110
Escherichia coli K-12 MG1655
Escherichia coli O157 Sakai
Encephalitozoon cuniculi
Enterococcus faecalis
Fusobacterium nucleatum
Geobacter sulfurreducens
Gloeobacter violaceus
Halobacterium sp.
Haemophilus ducreyi
Helicobacter hepaticus
Haemophilus influenzae
Helicobacter pylori J99
Helicobacter pylori 26695
Homo sapiens
Leptospira interrogans
Listeria innocua
Lactobacillus johnsonii
Lactococcus lactis
Listeria monocytogenes
Lactobacillus plantarum
Methanosarcina acetivorans
Mycobacterium bovis
Mycoplasma gallisepticum
Mycoplasma genitalium
Homo sapiens (Disease)
Methanococcus jannaschii
Methanopyrus kandleri
Mycobacterium leprae
Mesorhizobium loti
Methanosarcina mazei
Methanococcus maripaludis
Mus musculus
Mycoplasma mycoides
Mycobacterium avium paratuberculosis
Mycoplasma penetrans
Mycoplasma pneumoniae
Mycoplasma pulmonis
Mycobacterium tuberculosis CDC1551
Methanobacterium thermoautotrophicum
Mycobacterium tuberculosis H37Rv
Nanoarchaeum equitans
Nitrosomonas europaea
Neisseria meningitidis serogroup A
Neisseria meningitidis serogroup B
Oceanobacillus iheyensis
Pyrococcus abyssi
Pseudomonas aeruginosa
Pyrobaculum aerophilum
Plasmodium falciparum
Pyrococcus furiosus
Porphyromonas gingivalis
Pyrococcus horikoshii
Photorhabdus luminescens
Prochlorococcus marinus SS120
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT9313
Pasteurella multocida
Phytoplasma sp. onion yellows
Pseudomonas putida
Pseudomonas syringae
Rhodopirellula baltica
Rickettsia conorii
Rattus norvegicus
Rhodopseudomonas palustris CGA009
Rickettsia prowazekii
Ralstonia solanacearum
Streptococcus agalactiae
Staphylococcus aureus MW2
Streptococcus agalactiae NEM316
Staphylococcus aureus N315
Staphylococcus aureus Mu50
Saccharomyces cerevisiae
Streptomyces coelicolor
Staphylococcus epidermidis ATCC 12228
Shigella flexneri
Shigella flexneri 2457T
Streptomyces avermitilis
Sinorhizobium meliloti
Streptococcus mutans
Shewanella oneidensis
Streptococcus pyogenes M3
Streptococcus pyogenes M18
Streptococcus pneumoniae TIGR4
Schizosaccharomyces pombe
Streptococcus pneumoniae R6
Streptococcus pyogenes SSI1
Streptococcus pyogenes
Sulfolobus solfataricus
Salmonella typhimurium
Sulfolobus tokodaii
Salmonella typhi Ty2
Salmonella typhi
Synechococcus sp. PCC6301
Synechocystis sp.
Synechococcus sp. WH8102
Thermoplasma acidophilum
Treponema denticola
Thermosynechococcus elongatus
Thermotoga maritima
Treponema pallidum
Thermoanaerobacter tengcongensis
Thermus thermophilus
Thermoplasma volcanium
Tropheryma whipplei
Tropheryma whipplei TW08/27
Ureaplasma urealyticum
Vibrio cholerae
Vibrio parahaemolyticus
Vibrio vulnificus
Vibrio vulnificus YJ016
Wigglesworthia brevipalpis
Wolbachia wMel
Wolinella succinogenes
Xanthomonas axonopodis
Xanthomonas campestris
Xylella fastidiosa
Xylella fastidiosa Temecula1
Yersinia pestis
Yersinia pestis KIM
Yersinia pestis Mediaevails

posted 2004.06.16