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CellML

cellml_logo_s.gifThe CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups.
http://www.cellml.org

Systems Biolgy Markup Language (SBML)

SBML_tm_ss.jpgSBML defines machine-readable representation of biological network models that are specifically aimed at simulation and sysem analysis.
http://sbml.org/

Systems Biolgy Graphical Notation (SBGN)

LogoWhiteBackBlackLetters-75.png SBGN defines human-readable representation of biological network models in the most expressive and consistent manner.
http://sbgn.org/

The first SBGN Process Diagrams Level 1 specification is released (23 Aug.'08)
Download the specification and tell the community what you think!

Click to enlarge the images.
Example_InsulinSignaling.gif MAPK_400.gif >>> more examples

BioPAX

BioPAX (Biological Pathways Exchange) is a collaborative effort to create a data exchange format for biological pathway data.
http://www.biopax.org/